GeneNet in 2005

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GeneNet in 2005

The GeneNet system is designed for collection and analysis of the data on gene and metabolic networks, signal transduction pathways and kinetic characteristics of elementary processes. In the past 2 years, the GeneNet structure was considerably improved: (i) the current version of the database is now implemented using ORACLE9i; (ii) the capacities to describe the structure of the protein comple...

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GeneNet: A Meta-Sequence Similarity Analysis System

Sequence analysis using bioinformatics tools is an essential step in molecular biology. However, most of the web sites for analysis are dispersed in different locations, users must remember all web sites and change query in the proper format in each web site. Furthermore, databases are being updated continuously, users must repeat laborous searchs if they do not get satisfactory results from th...

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Interactive data input into the GeneNet database

SUMMARY The GeneNet database has been developed for a formalized hierarchical description of the gene networks. To provide rapid data accumulation in the database, the Java graphical interface for data input through the Internet by independent experts equipped with convenient visual tools is developed. AVAILABILITY http://wwwmgs. bionet.nsc.ru/systems/MGL/GeneNet/

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Reverse Engineering Genetic Networks using the GeneNet Package

GeneNet is a package for analyzing highdimensional (time series) data obtained from highthroughput functional genomics assays, such as expression microarrays or metabolic profiling. Specifically, GeneNet allows to infer large-scale gene association networks. These are graphical Gaussian models (GGMs) that represent multivariate dependencies in biomolecular networks by means of partial correlati...

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GeneNet: a gene network database and its automated visualization

MOTIVATION Gene networks that provide the regulation of physiological processes are the basic feature of organisms. Information regarding the regulation of gene expression and signal transduction pathways is increasing rapidly. However, the information is hard to formalize and systematize. Ways and means for automated visualization of the gene networks based on their formalized description are ...

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ژورنال

عنوان ژورنال: Nucleic Acids Research

سال: 2004

ISSN: 1362-4962

DOI: 10.1093/nar/gki077